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Haplogroup R2-M479

Macro-haplogroup
R
Parent clade
R
Formed (estimate)
c. 22,000 - 27,000 years before present (estimate)
TMRCA (estimate)
c. 17,000 - 21,000 years ago (estimate)

Overview

Haplogroup R2-M479 is one of the two principal branches of haplogroup R and forms a distinct Upper Paleolithic paternal lineage with its deepest roots in southern Central Asia, Iran and South Asia. Unlike R1, which experienced massive Bronze Age expansions across Eurasia, R2 followed a different demographic trajectory characterized by regional continuity, localized founder effects and moderate expansions during the Neolithic and later historical periods. R2 has long been associated with populations of northern and eastern Iran, Afghanistan, Pakistan and the Indian subcontinent, and its distribution reflects ancient interactions between Iranian plateau communities and early South Asian populations. R2 likely developed among hunter gatherer groups living in regions situated between the Iranian plateau and South Central Asia during the terminal Pleistocene. As agriculture spread into these regions during the Neolithic, R2-bearing populations contributed to several early settled communities in eastern Iran, Balochistan and the Indus Valley region. Later expansions into the Indian subcontinent occurred during periods associated with Chalcolithic cultures, regional early states and historic era movements within South Asia. The majority of modern R2 chromosomes fall into the R2a (R-M124) branch, which experienced significant growth during the late Holocene and today forms one of the major paternal lineages in parts of South Asia. More basal forms of R2 are rare, providing important insight into the earliest phases of R diversification and movements across southwestern Asia.

Geographic distribution

R2-M479 is concentrated in South Asia, especially in India, Pakistan and Bangladesh. It is also common in eastern Iran and Afghanistan and appears at moderate levels in Central Asia. Low frequency traces occur in the Near East and the Caucasus, typically reflecting ancient or medieval movements.

Ancient DNA

  • Neolithic and Chalcolithic individuals from eastern Iran display ancestry patterns compatible with early R2 lineages.
  • Archaeological remains from Balochistan and adjoining areas show signals consistent with R2 bearing populations in early settled farming communities.
  • Later historic period samples from northwestern South Asia exhibit R2a and earlier R2 related signatures.
  • R2 has not yet been recovered in large numbers from Paleolithic remains, but its geographic distribution fits a deep presence in southwestern Asia.

Phylogeny & subclades

R2-M479 splits into two principal branches: R2a (M124), the dominant modern lineage, and rare basal forms grouped under R2*(M479). Some minor branches are present but poorly represented in global datasets.

  • R2a (M124)
  • R2* (basal R2-M479(xR2a))

Notes & context

R2 occupies a key position for understanding the demographic transitions from Paleolithic to Neolithic societies in southwestern Asia and provides a contrasting expansion model to the explosive growth seen in R1.