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Haplogroup R1a-Y3

Macro-haplogroup
R
Parent clade
R1a-Z94
Formed (estimate)
c. 4,300 - 4,700 years before present (estimate)
TMRCA (estimate)
c. 3,600 - 4,100 years ago (estimate)

Overview

R1a-Y3 is one of the earliest and most phylogenetically significant branches of the R1a-Z94 cluster. It emerged in the Late Bronze Age among populations living across the Steppe-Ural region, where early Indo-Iranian societies were forming. Archaeological connections link Y3 ancestors to communities involved in the development of chariot warfare, advanced bronze metallurgy and long-distance pastoral mobility. These groups interacted extensively with Andronovo, Sintashta and BMAC-related populations across Central Asia. During the Iron Age, Y3 became prominent among Iranian-speaking nomadic groups such as the Saka and Sarmatians. The lineage spread across regions that now comprise Kazakhstan, Uzbekistan, Turkmenistan, Tajikistan, Afghanistan and parts of Iran. Y3 lineages have been found in kurgan burials associated with warrior elites, highlighting their social importance. Y3 also contributed to population movements into the Iranian plateau and northern South Asia, forming part of the early Indo-Aryan and early Iranian gene pool. Modern distributions reflect these historical processes and the complex demographic landscape of Central Asia over the past four millennia.

Geographic distribution

R1a-Y3 is common in Tajikistan, Afghanistan, northern Pakistan and northeastern Iran. High levels appear in Kazakhstan and Uzbekistan. Smaller but notable clusters exist in Kyrgyzstan, Turkmenistan, and among Caucasus populations. Low frequencies appear across South Asia.

Ancient DNA

  • Andronovo samples show several early Y3 lineages.
  • Saka and early Sarmatian burials include Y3-derived individuals.
  • Iranian plateau Iron Age samples contain upstream Y3 variants.
  • Early Central Asian pastoralist burials show Y3 ancestral patterns.
  • Altai nomadic individuals from the Iron Age reveal Y3 presence.

Phylogeny & subclades

Y3 divides into major clusters including F3523 and additional Central Asian macrobranches.

  • R1a-F3523
  • Central Asian microclusters
  • Indo-Iranian related branches

Notes & context

Y3 is critical for understanding early Indo-Iranian population formation and later steppe nomadic expansions.