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Haplogroup E1b

Ancient branch leading to E1b1

Macro-haplogroup
E
Parent clade
E1
Formed (estimate)
about 46,000 to 50,000 years ago
TMRCA (estimate)
around 38,000 to 45,000 years ago

Overview

E1b represents a crucial early split within haplogroup E, marking the lineage from which the massive E1b1 radiation eventually developed. This ancestral branch sits at an important transitional point in African population history, bridging the earliest Pleistocene diversification of E with the later, far larger expansions of E1b1a and E1b1b. The formation of E1b likely occurred in northeastern or eastern Africa during a period when human populations were still organized into dispersed foraging groups with deep genetic divergence. While E1b itself survives mainly through its downstream lineages, its placement in the tree reveals a pivotal moment in the structuring of African paternal lineages tens of thousands of years before pastoralism or agriculture.

Geographic distribution

Modern populations rarely show basal E1b* lineages; instead, nearly all present-day carriers belong to the immense E1b1 cluster. Nonetheless, the geographical context inferred from phylogenetic analyses points to origins in the Horn of Africa or nearby regions. The lack of surviving basal E1b outside this zone supports a scenario of early regional continuity followed by later expansions that redistributed E1b1 descendants across the entire continent and into North Africa, the Near East, and Europe.

Ancient DNA

  • No securely identified ancient samples belong specifically to basal E1b*, but the clade must have been present in late Pleistocene eastern Africa based on molecular clock estimates.
  • The downstream lineage E1b1 appears frequently in Holocene-era ancient samples, including Neolithic and pastoralist contexts from Egypt, Sudan, and the Horn of Africa.
  • The emergence of E1b predates known cultural transitions, implying that its early carriers belonged to hunter-gatherer communities long before the spread of Afroasiatic cultures or agricultural systems.

Phylogeny & subclades

E1b is the direct ancestor of E1b1, one of the largest and most diverse paternal lineages in human populations. E1b1 splits into two monumental branches: E1b1a and E1b1b. E1b1a is strongly associated with West and Central African expansions and would later dominate the male demographic component of the Bantu migration. E1b1b is distributed across North Africa, the Horn of Africa, the Near East, and southern Europe, with its own complex internal radiation. The deep time depth of E1b places it at a fundamental node that connects pre-Holocene diversification with Holocene demographic processes.

  • E1b* (rare, mostly theoretical or extremely low-frequency)
  • E1b1 (major branch leading to E1b1a and E1b1b)

Notes & context

Although E1b itself is overshadowed by the much larger expansions of its descendant branches, it holds key importance for reconstructing early African paternal phylogeny. The absence of widespread basal lineages suggests either ancient bottlenecks or strong expansions from a limited number of sub-branches. Continued sequencing of African forager groups may eventually reveal additional remnants of basal E1b diversity.